# datafiles

datafileName: Reddin et al. Modern metaanalysis supporting data.csv
dataDOI: https://doi.org/10.5281/zenodo.3465280
fileMD5: 86730353475013cc4230f85527a1887e
primaryURL:
  https://zenodo.org/record/3465281/files/Reddin%20et%20al.%20Modern%20metaanalysis%20supporting%20data.csv?download=1


datafileName: placeholder_dem1.zip
dataDOI: placeholder_dem
fileMD5: placeholder_md5string_dem
primaryURL:
  https://www.cnidaria.nat.fau.de/tersane/public/chronosphere/chrono-arch-1/archive/paleomap_dem_20180811_1.zip


datafileName: paleomap_model_v3-GPlates.zip
dataDOI: placeholder_model_old
fileMD5: placeholder_md5string_model
primaryURL:
  https://www.cnidaria.nat.fau.de/tersane/public/chronosphere/chrono-arch-1/archive/paleomap_model_v3-GPlates.zip


datafileName: paleomap_dem_20180811_0.5.zip
dataDOI: placeholder_dem
fileMD5: placeholder_md5string_dem0.5
primaryURL:
  https://www.cnidaria.nat.fau.de/tersane/public/chronosphere/chrono-arch-1/archive/paleomap_dem_20180811_0.5.zip


datafileName: paleomap_model_v19o_r1c.zip
dataDOI: placeholder_paleocoastlines_doi
fileMD5: placeholder_md5string_model
primaryURL:
  https://www.cnidaria.nat.fau.de/tersane/public/chronosphere/chrono-arch-1/archive/paleomap_model_v19o_r1c.zip


datafileName: pbdb_occs.rds
dataDOI: testDOI_pbdb1
fileMD5: md5string
primaryURL:
  https://www.cnidaria.nat.fau.de/tersane/public/chronosphere/chrono-arch-1/archive/pbdb_occs_20191122_species/pbdb_occs.rds


datafileName: pbdb_occs.rds
dataDOI: testDOI_pbdb2
fileMD5: md5string
primaryURL:
  https://www.cnidaria.nat.fau.de/tersane/public/chronosphere/chrono-arch-1/archive/pbdb_occs_20200217_species/pbdb_occs.rds


datafileName: NaturalEarth_land_4-1-0_10.zip
dataDOI: placeholder_doi_ne
fileMD5: placeholder_md5string_ne
primaryURL:
  https://www.cnidaria.nat.fau.de/tersane/public/chronosphere/chrono-arch-1/archive/NaturalEarth_land_4-1-0_10.zip


# refs

bibtex:
  @article{kocsis2021increase,
    title = {Increase in Marine Provinciality over the Last 250 Million Years Governed More by Climate Change than Plate Tectonics},
    author = {Kocsis, Ádámm T. and Reddin, Carl J. and Scotese, CR and Valdes, Paul J. and Kiessling, Wolfgang},
    year = {2021},
    journal = {Proceedings of the Royal Society B},
    pages = {20211342},
    doi = {10.1098/rspb.2021.1342}
  }

text:
  Kocsis, Á. T., Reddin, C. J., Scotese, C., Valdes, P. J., & Kiessling, W. (2021). Increase in marine provinciality over the last 250 million years governed more by climate change than plate tectonics. Proceedings of the Royal Society B, 20211342. https://doi.org/10.1098/rspb.2021.1342


bibtex:
  @article{reddin2020marine,
    title = {Marine Clade Sensitivities to Climate Change Conform across Timescales},
    author = {Reddin, Carl J. and Nätscher, Paulina S. and Kocsis, Ádám T. and Pörtner, Hans-Otto and Kiessling, Wolfgang},
    year = {2020},
    month = mar,
    journal = {Nature Climate Change},
    volume = {10},
    number = {3},
    pages = {249--253},
    publisher = {{Nature Publishing Group}},
    issn = {1758-6798},
    doi = {10.1038/s41558-020-0690-7},
    abstract = {Climate change induced warming, hypoxia and acidification threaten marine species. Experimental work shows that the susceptibility of clades to climate-related stressors in the modern ocean is related to their extinction risk in the fossil record, which could allow prediction of future responses.},
    copyright = {2020 The Author(s), under exclusive licence to Springer Nature Limited},
    language = {en},
    file = {/media/adam/work/Dropbox/Libraries/- Journals/N/Nature Ecology and Evolution/Vol. 4, 2020/Reddin et al. - 2020 - Marine clade sensitivities to climate change confo.pdf}
  }

text:
  Reddin, C. J., Nätscher, P. S., Kocsis, Á. T., Pörtner, H.-O., & Kiessling, W. (2020). Marine clade sensitivities to climate change conform across timescales. Nature Climate Change, 10(3), 249–253. https://doi.org/10.1038/s41558-020-0690-7


bibtex:
  @article{scotese2018paleomap,
   author = {Scotese, Christopher R and Wright, Nicky},
   title = {{PALEOMAP} {Paleodigital} {Elevation} {Models} ({PaleoDEMS}) for the {Phanerozoic}},
   url = {https://www.earthbyte.org/paleodem-resource-scotese-and-wright-2018/},
   year = {2018}
  }

text:
  Scotese, C. R., & Wright, N. (2018). PALEOMAP Paleodigital Elevation Models (PaleoDEMS) for the Phanerozoic. https://www.earthbyte.org/paleodem-resource-scotese-and-wright-2018/


bibtex:
  @misc{scotese2016tutorial,
   author = {Scotese, Christopher R},
   title = {{PALEOMAP} {PaleoAtlas} for {GPlates} and the {PaleoData} {Plotter} {Program}},
   url = {http://www.earthbyte.org/paleomap‐ paleoatlas‐for‐gplates},
   year = {2016}
  }

text:
  Scotese, C. R. (2016). PALEOMAP PaleoAtlas for GPlates and the PaleoData Plotter Program. http://www.earthbyte.org/paleomap‐ paleoatlas‐for‐gplates


bibtex:
  @article{kocsis2021mapping,
   abstract = {Sea levels shape the face of the Earth, define processes of sedimentation, and influence the evolution of life via the distribution of habitats. Ancient topographies can be reconstructed using the history and understanding of tectonic processes, lithological evidence, and present-day topographies. Paleogeographic reconstructions must accommodate ever newer sources of geological data, so we can refine and improve our model of ancient topography and bathymetry. Here, we assess the accuracy of a set of Phanerozoic digital paleogeographic maps by testing the proposed distribution of flooded shallow seas and land using fossil occurrence data from the Paleobiology Database. After noting a moderate match, we modified the positions of the coastlines and continental margins of these topographic models to reflect times of maximum transgression. Using the updated paleogeographic maps, we outline the changes of land and shallow marine areas over time and suggest ways they can be used for further investigations of our planet's history.},
   author = {Kocsis, Ádám T. and Scotese, Christopher R.},
   doi = {10.1016/j.earscirev.2020.103463},
   issn = {0012-8252},
   journal = {Earth-Science Reviews},
   keywords = {Phanerozoic, Paleogeography, Fossils, Global, Coastlines, Continental flooding, Reconstruction},
   language = {en},
   note = {tex.ids= kocsis2020mapping},
   pages = {103463},
   title = {Mapping paleocoastlines and continental flooding during the {Phanerozoic}},
   url = {https://www.sciencedirect.com/science/article/pii/S0012825220305092},
   urldate = {2021-02-08},
   volume = {213},
   year = {2021}
  }

text:
  Kocsis, Á. T., & Scotese, C. R. (2021). Mapping paleocoastlines and continental flooding during the Phanerozoic. Earth-Science Reviews, 213, 103463. https://doi.org/10.1016/j.earscirev.2020.103463


bibtex:
  @misc{kocsis_a_t_2020_4297693,
   author = {Kocsis, A. T. and Scotese, C. R.},
   doi = {10.5281/zenodo.4297693},
   publisher = {Zenodo},
   title = {{PaleoMAP} {PaleoCoastlines} data},
   url = {https://doi.org/10.5281/zenodo.4297693},
   year = {2020}
  }

text:
  Kocsis, A. T., & Scotese, C. R. (2020). PaleoMAP PaleoCoastlines data. Zenodo. https://doi.org/10.5281/zenodo.4297693


text:
  Please remember to acknowledge the Paleobiology Database (http://paleobiodb.org) in your publication.


# databases

dat: SOM-kocsis-provinciality
sourceURL: https://zenodo.org/record/3973037
databaseName:
  Code, used data and supplementary items for the articled Increase in marine provinciality over the last 250 million years governed more by climate change than plate tectonics


dat: SOM-reddin-sensitivity
sourceURL: https://zenodo.org/record/3465281
databaseName:
  Repository for: Reddin et al. 2020. Marine clade sensitivities to climate change conform across time scales


# variables

var: sstinter
infoURL: http://www.chronosphere-portal.org/
variableName:
  S6. Interpolated  temperature  reconstructions  based  on  the  HadCM3L  climate  models  and  the PaleoMAP Paleocoastlines


var: occs
variableName: Denomrmalized occurrence table (chronosphere)
varDescription: dummyfile
infoURL: https://chronosphere-portal.github.io/docs/pbdb/
API:
  https://paleobiodb.org/data1.2/occs/list.csv?datainfo&rowcount&interval=Ediacaran,Holocene&show=class,classext,genus,subgenus,coll,coords,loc,paleoloc,strat,stratext,lith,env,ref,crmod,timebins,timecompare,refattr,entname,attr,ident,img,plant,abund,ecospace,taphonomy,etbasis,pres,prot,lithext,geo,methods,resgroup,refattr,ent


